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Disc1
| 1 | Alpha – Anteludium | Epica | 1:38 |
| 2 | Abyss of Time – Countdown to Singularity | Epica | 5:20 |
| 3 | The Skeleton Key | Epica | 5:06 |
| 4 | Seal of Solomon | Epica | 5:28 |
| 5 | Gaia | Epica | 4:46 |
| 6 | Code of Life | Epica | 5:58 |
| 7 | Freedom – The Wolves Within | Epica | 5:37 |
Disc2
| 1 | Kingdom of Heaven, Part 3 – The Antediluvian Universe | Epica | 13:24 |
| 2 | Rivers | Epica | 4:48 |
| 3 | Synergize – Manic Manifest | Epica | 6:57 |
| 4 | Twilight Reverie – The Hypnagogic State | Epica | 4:29 |
| 5 | Omega – Sovereign of the Sun Spheres | Epica | 7:06 |
Disc3
| 1 | Alpha – Anteludium | Epica | 1:38 |
| 2 | Abyss of Time – Countdown to Singularity | Epica | 5:20 |
| 3 | The Skeleton Key | Epica | 5:06 |
| 4 | Seal of Solomon | Epica | 5:28 |
| 5 | Gaia | Epica | 4:46 |
| 6 | Code of Life | Epica | 5:58 |
| 7 | Freedom – The Wolves Within | Epica | 5:37 |
| 8 | Kingdom of Heaven, Part 3 – The Antediluvian Universe | Epica | 13:24 |
| 9 | Rivers | Epica | 4:48 |
| 10 | Synergize – Manic Manifest | Epica | 6:57 |
| 11 | Twilight Reverie – The Hypnagogic State | Epica | 4:29 |
| 12 | Omega – Sovereign of the Sun Spheres | Epica | 7:06 |
Disc4
| 1 | Rivers (a cappella version) | Epica | 4:34 |
| 2 | Abyss o’ Time | Epica | 4:13 |
| 3 | Omegacoustic | Epica | 4:29 |
| 4 | El código vital | Epica | 3:50 |
Disc5
| 1 | Alpha – Anteludium (orchestral version) | Epica | 1:38 |
| 2 | Abyss of Time – Countdown to Singularity (orchestral version) | Epica | 5:06 |
| 3 | The Skeleton Key (orchestral version) | Epica | 5:06 |
| 4 | Seal of Solomon (orchestral version) | Epica | 5:29 |
| 5 | Gaia (orchestral version) | Epica | 4:19 |
| 6 | Code of Life (orchestral version) | Epica | 5:58 |
| 7 | Freedom – The Wolves Within (orchestral version) | Epica | 5:37 |
| 8 | Kingdom of Heaven, Part 3 – The Antediluvian Universe (orchestral version) | Epica | 13:04 |
| 9 | Rivers (orchestral version) | Epica | 4:48 |
| 10 | Synergize – Manic Manifest (orchestral version) | Epica | 6:56 |
| 11 | Twilight Reverie – The Hypnagogic State (orchestral version) | Epica | 4:14 |
| 12 | Omega – Sovereign of the Sun Spheres (orchestral version) | Epica | 6:53 |
Disc6
| 1 | Alpha – Anteludium (instrumental version) | Epica | 1:38 |
| 2 | Abyss of Time – Countdown to Singularity (instrumental version) | Epica | 5:20 |
| 3 | The Skeleton Key (instrumental version) | Epica | 5:06 |
| 4 | Seal of Solomon (instrumental version) | Epica | 5:28 |
| 5 | Gaia (instrumental version) | Epica | 4:46 |
| 6 | Code of Life (instrumental version) | Epica | 5:58 |
| 7 | Freedom – The Wolves Within (instrumental version) | Epica | 5:37 |
| 8 | Kingdom of Heaven, Part 3 – The Antediluvian Universe (instrumental version) | Epica | 13:24 |
| 9 | Rivers (instrumental version) | Epica | 4:48 |
| 10 | Synergize – Manic Manifest (instrumental version) | Epica | 6:56 |
| 11 | Twilight Reverie – The Hypnagogic State (instrumental version) | Epica | 4:29 |
| 12 | Omega – Sovereign of the Sun Spheres (instrumental version) | Epica | 7:06 |