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Disc1
| 1 | Men in Black 3 (main titles) | Danny Elfman | 5:54 |
| 2 | Spiky Bulba | Danny Elfman | 2:17 |
| 3 | The Set-Up | Danny Elfman | 3:35 |
| 4 | Headquarters | Danny Elfman | 1:59 |
| 5 | Regret | Danny Elfman | 3:03 |
| 6 | Wrong | Danny Elfman | 1:02 |
| 7 | Not Funny | Danny Elfman | 1:48 |
| 8 | Big Trouble | Danny Elfman | 1:14 |
| 9 | Out on a Limb | Danny Elfman | 2:00 |
| 10 | Time Jump | Danny Elfman | 1:14 |
| 11 | Bad Fortune | Danny Elfman | 1:14 |
| 12 | Forget Me Not | Danny Elfman | 1:27 |
| 13 | Into the Past | Danny Elfman | 1:37 |
| 14 | Griffin Steps Up | Danny Elfman | 1:40 |
| 15 | True Story | Danny Elfman | 0:41 |
| 16 | The Prize-Monocycles | Danny Elfman | 3:56 |
| 17 | Boris Meets Boris | Danny Elfman | 1:26 |
| 18 | Under the Bridge | Danny Elfman | 5:51 |
| 19 | The Mission Begins | Danny Elfman | 5:27 |
| 20 | Mission Accomplished | Danny Elfman | 3:07 |
| 21 | A Close One | Danny Elfman | 1:33 |
| 22 | Men in Black 3 (main title revisited) | Danny Elfman | 1:33 |