| 1 | Shion 〜過去の記憶〜 | Yasunori Mitsuda | 1:15 |
| 2 | Prologue | Yasunori Mitsuda | 4:34 |
| 3 | Gnosis | Yasunori Mitsuda | 4:25 |
| 4 | U-TIC機関 | Yasunori Mitsuda | 2:48 |
| 5 | 心を閉ざした少女 | Yasunori Mitsuda | 2:14 |
| 6 | Ormus | Yasunori Mitsuda | 2:29 |
| 7 | Nephilim | Yasunori Mitsuda | 2:33 |
| 8 | 温もり | Yasunori Mitsuda | 2:01 |
| 9 | The Resurrection | Yasunori Mitsuda | 1:53 |
| 10 | 虚無の浜辺 | Yasunori Mitsuda | 2:35 |
| 11 | Green Sleeves | Yasunori Mitsuda | 2:26 |
| 12 | KOS-MOS | Yasunori Mitsuda | 2:27 |
| 13 | The Miracle | Yasunori Mitsuda | 1:52 |
| 14 | Zarathustra | Yasunori Mitsuda | 3:05 |
| 15 | Ω | Yasunori Mitsuda | 4:08 |
| 16 | Escape | Yasunori Mitsuda | 2:32 |
| 17 | Pain | Yasunori Mitsuda | 5:38 |
| 18 | Kokoro | Yasunori Mitsuda | 5:37 |
| 19 | Shion 〜想い〜 | Yasunori Mitsuda | 1:24 |
| 20 | World to be Born | Yasunori Mitsuda | 3:19 |
| 21 | Pain -piano version- | Yasunori Mitsuda | 2:45 |
| 1 | Opening | Yasunori Mitsuda | 4:02 |
| 2 | Battle | Yasunori Mitsuda | 2:59 |
| 3 | 戦闘終了 | Yasunori Mitsuda | 0:42 |
| 4 | 起動試験 | Yasunori Mitsuda | 2:22 |
| 5 | 想いで | Yasunori Mitsuda | 3:18 |
| 6 | 覚醒 | Yasunori Mitsuda | 2:20 |
| 7 | シオンの危機 | Yasunori Mitsuda | 1:53 |
| 8 | 戦闘するKOS-MOS | Yasunori Mitsuda | 3:19 |
| 9 | 哀しみ | Yasunori Mitsuda | 3:54 |
| 10 | Life or Death | Yasunori Mitsuda | 3:15 |
| 11 | Game Over | Yasunori Mitsuda | 0:41 |
| 12 | Margulis | Yasunori Mitsuda | 4:29 |
| 13 | 追われる宇宙艇 | Yasunori Mitsuda | 3:42 |
| 14 | Relief | Yasunori Mitsuda | 2:47 |
| 15 | 日常 | Yasunori Mitsuda | 1:54 |
| 16 | U.M.N. MODE | Yasunori Mitsuda | 2:39 |
| 17 | Durandal | Yasunori Mitsuda | 2:33 |
| 18 | 敵艦内への侵攻 | Yasunori Mitsuda | 0:40 |
| 19 | Kookai Foundation | Yasunori Mitsuda | 1:57 |
| 20 | 不安 | Yasunori Mitsuda | 4:07 |
| 21 | Panic | Yasunori Mitsuda | 2:26 |
| 22 | Song of Nephilim | Yasunori Mitsuda | 1:05 |
| 23 | Inner Space | Yasunori Mitsuda | 1:47 |
| 24 | Albedo | Yasunori Mitsuda | 3:50 |
| 25 | Proto Merkabah | Yasunori Mitsuda | 5:30 |
| 26 | Last Battle | Yasunori Mitsuda | 5:04 |