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Disc1
| 1 | 1969: We Came in Peace | David Arnold | 2:01 |
| 2 | S.E.T.I. - Radio Signal | David Arnold | 1:53 |
| 3 | Mysto Bridge / Satellite Collision / Destroyers Disengage / Russell Casse - Pilot | David Arnold | 2:17 |
| 4 | First Sighting / AWAC Attack | David Arnold | 2:18 |
| 5 | The Darkest Day | David Arnold | 4:14 |
| 6 | Moving Day / Countdown | David Arnold | 2:12 |
| 7 | Cancelled Leave | David Arnold | 1:46 |
| 8 | Commence Lift-Off / Parabolic Indenwhat? | David Arnold | 1:17 |
| 9 | Evacuation | David Arnold | 5:48 |
| 10 | Firestorm | David Arnold | 1:24 |
| 11 | Aftermath | David Arnold | 3:36 |
| 12 | Base Attack | David Arnold | 6:11 |
| 13 | Marilyn Found | David Arnold | 1:29 |
| 14 | Area 51 / The Big Tamale / Formaldehyde Freak Show | David Arnold | 4:12 |
| 15 | El Toro Destroyed | David Arnold | 1:31 |
| 16 | Slimey Wakes Up | David Arnold | 5:24 |
| 17 | Target Remains / Rescue | David Arnold | 5:56 |
| 18 | The Death of Marilyn / Dad's a Genius | David Arnold | 3:34 |
| 19 | Alien Ship Powers Up | David Arnold | 1:46 |
| 20 | International Code | David Arnold | 1:32 |
| 21 | Wedding | David Arnold | 1:50 |
| 22 | The President's Speech | David Arnold | 3:11 |
Disc2
| 1 | Just in Case / Attacker Fires Up | David Arnold | 3:10 |
| 2 | The Launch Tunnel / Mutha Ship / Virus Uploaded | David Arnold | 8:27 |
| 3 | Hide! / Russell's Packin' (The Day We Fight Back) | David Arnold | 4:44 |
| 4 | He Did It | David Arnold | 1:33 |
| 5 | Jolly Roger | David Arnold | 3:17 |
| 6 | Victory | David Arnold | 3:40 |
| 7 | End Credits | David Arnold | 9:07 |
| 8 | 1969: We Came in Peace (alternate) | David Arnold | 2:11 |
| 9 | Destroyers Disengage (No Choir) | David Arnold | 0:34 |
| 10 | Cancelled Leave (alternate) | David Arnold | 1:43 |
| 11 | Commence Lift-Off (alternate) | David Arnold | 0:55 |
| 12 | Base Attack (Segment - Film version) | David Arnold | 2:27 |
| 13 | Marilyn Found (No Choir) | David Arnold | 1:28 |
| 14 | Target Remains / Rescue (alternate) | David Arnold | 2:40 |
| 15 | Dad's a Genius (alternate) | David Arnold | 0:45 |
| 16 | Attacker Fires Up (original version - No Choir) | David Arnold | 2:01 |
| 17 | Virus Uploaded (alternate) | David Arnold | 2:35 |
| 18 | The Day We Fight Back (original version) | David Arnold | 5:48 |
| 19 | Jolly Roger (alternate) | David Arnold | 3:22 |
| 20 | End Credits (Segment, No Choir) | David Arnold | 2:47 |