| 1 | The Cruel Angel's Thesis (Director's Edit Version) | Yōko Takahashi | 4:05 |
| 2 | Fly Me to the Moon 2020 | Yōko Takahashi | 4:33 |
| 3 | Angel Attack | Shirō Sagisu | 2:31 |
| 4 | Rei I | Shirō Sagisu | 2:59 |
| 5 | Hedgehog's Dilemma | Shirō Sagisu | 2:47 |
| 6 | Barefoot in the Park | Shirō Sagisu | 2:37 |
| 7 | Ritsuko | Shirō Sagisu | 3:03 |
| 8 | Misato | Shirō Sagisu | 1:32 |
| 9 | Asuka Strikes! | Shirō Sagisu | 2:23 |
| 10 | Nerv | Shirō Sagisu | 1:58 |
| 11 | Tokyo-3 | Shirō Sagisu | 2:25 |
| 12 | I. Shinji | Shirō Sagisu | 2:02 |
| 13 | Eva-01 | Shirō Sagisu | 2:48 |
| 14 | A Step Forward into Terror | Shirō Sagisu | 1:55 |
| 15 | Eva-02 | Shirō Sagisu | 2:00 |
| 16 | Decisive Battle | Shirō Sagisu | 2:24 |
| 17 | Eva-00 | Shirō Sagisu | 1:51 |
| 18 | The Beast | Shirō Sagisu | 1:40 |
| 19 | Marking Time, Waiting for Death | Shirō Sagisu | 2:44 |
| 20 | Rei II | Shirō Sagisu | 2:56 |
| 21 | Fly Me to the Moon | Shirō Sagisu | 2:58 |
| 22 | Next Episode Preview | Shirō Sagisu | 0:32 |
| 23 | Fly Me to the Moon (Yoko Takahashi Acid Bossa Version) | Yōko Takahashi | 3:56 |
| 24 | The Cruel Angel's Thesis (Director's Edit Version II) | Misato, Rei, Asuka | 4:04 |
| 1 | A Vision | Yōko Takahashi | 4:56 |
| 2 | The Cruel Angel's Thesis (TV Size Version) | Yōko Takahashi | 1:33 |
| 3 | Borderline Case | Shirō Sagisu | 2:21 |
| 4 | A Crystalline Night Sky | Shirō Sagisu | 2:22 |
| 5 | Angel Attack II | Shirō Sagisu | 2:00 |
| 6 | Angel Attack III | Shirō Sagisu | 2:25 |
| 7 | Both of You, Dance Like You Want to Win! | Shirō Sagisu | 1:51 |
| 8 | Waking Up in the Morning | Shirō Sagisu | 1:30 |
| 9 | Background Music | Shirō Sagisu | 1:57 |
| 10 | A Moment When Tension Breaks | Shirō Sagisu | 4:12 |
| 11 | The Day Tokyo-3 Stood Still | Shirō Sagisu | 1:42 |
| 12 | Spending Time in Preparation | Shirō Sagisu | 2:23 |
| 13 | She Said, "Don't Make Others Suffer for Your Personal Hatred." | Shirō Sagisu | 1:55 |
| 14 | Magmadiver | Shirō Sagisu | 2:24 |
| 15 | Pleasure Principle | Shirō Sagisu | 3:50 |
| 16 | The Beast II | Shirō Sagisu | 2:19 |
| 17 | Thanatos | Shirō Sagisu | 3:30 |
| 18 | Rei III | Shirō Sagisu | 3:44 |
| 19 | When I Find Peace of Mind | Shirō Sagisu | 3:35 |
| 20 | Fly Me to the Moon 2020 (Short Size Version) | Yōko Takahashi | 1:10 |
| 21 | Fly Me to the Moon (Rei (#5) TV Size Remix Version) | Rei | 1:10 |
| 22 | Fly Me to the Moon (Rei (#6) TV Size Remix Version) | Rei | 1:10 |
| 23 | Next Episode Preview | Shirō Sagisu | 0:19 |
| 24 | Fly Me to the Moon (Aya Bossa Techno Version) | Aya | 3:52 |
| 25 | Fly Me to the Moon (Aki Jungle Version) | Aki | 4:40 |
| 26 | B-16 Rhythm Only (Misato) | Shirō Sagisu | 1:31 |
| 27 | B-17 Rhythm Only (Asuka Strikes!) | Shirō Sagisu | 2:22 |
| 1 | Happiness is the Smell of Sin | Yōko Takahashi | 4:37 |
| 2 | Eternal Embrace | Yōko Takahashi | 5:26 |
| 3 | Normal Blood | Shirō Sagisu | 1:58 |
| 4 | Harbinger of Tragedy | Shirō Sagisu | 1:39 |
| 5 | Childhood Memories, Shut Away | Johann Sebastian Bach | 0:36 |
| 6 | Those Women Longed for the Touch of Others' Lips, and Thus Invited Their Kisses. | Shirō Sagisu | 2:20 |
| 7 | Background Music II | Shirō Sagisu | 1:34 |
| 8 | Background Music III | Shirō Sagisu | 2:33 |
| 9 | In the Depths of Human Hearts | Shirō Sagisu | 2:23 |
| 10 | Hostility Restrained | Shirō Sagisu | 1:38 |
| 11 | Three of Me, One of Someone Else | Shirō Sagisu | 2:21 |
| 12 | Crime of Innocence | Shirō Sagisu | 2:26 |
| 13 | The Sorrow of Losing the Object of One's Dependence | Shirō Sagisu | 1:33 |
| 14 | Do You Love Me? | Shirō Sagisu | 2:21 |
| 15 | Separation Anxiety | Shirō Sagisu | 2:28 |
| 16 | Introjection | Shirō Sagisu | 2:27 |
| 17 | Depression | Shirō Sagisu | 2:36 |
| 18 | Splitting of the Breast | Shirō Sagisu | 2:15 |
| 19 | Infantile Dependence, Adult Dependency | Shirō Sagisu | 3:01 |
| 20 | Mother is the First Other | Shirō Sagisu | 2:25 |
| 21 | The Heady Feeling of Freedom | Shirō Sagisu | 1:49 |
| 22 | Good, or Don't Be. | Shirō Sagisu | 1:23 |
| 23 | Fly Me to the Moon (Yoko Takahashi TV Size Version) | Yōko Takahashi | 1:10 |
| 24 | Fly Me to the Moon (4-Beat TV Size Version) | Yōko Takahashi | 1:09 |
| 25 | Fly Me to the Moon (Aya Bossa Techno TV Size Version) | Aya | 1:08 |
| 26 | Fly Me to the Moon (Yoko Takahashi Acid Bossa TV Size Version) | Yōko Takahashi | 1:08 |
| 27 | Fly Me to the Moon (4-Beat Off Vocal TV Size Version) | Yōko Takahashi | 1:08 |
| 28 | Fly Me to the Moon (Off Vocal TV Size Version) | Yōko Takahashi | 1:09 |
| 29 | Fly Me to the Moon (Aki Jungle TV Size Version) | Aki | 1:08 |
| 30 | Fly Me to the Moon (B-22A Type TV Size Version) | Shirō Sagisu | 1:08 |
| 31 | Fly Me to the Moon (Rei (#23) TV Size Version) | Rei | 1:10 |
| 32 | Fly Me to the Moon (Rei (#25) TV Size Version) | Rei | 1:10 |
| 33 | Fly Me to the Moon (Rei (#26) TV Size Version) | Rei | 1:12 |
| 34 | Fly Me to the Moon (Aya London Beat Version) | Aya | 8:16 |
| 35 | B-20 il tuo sorriso | Shirō Sagisu | 4:32 |
| 1 | Cello - Fourth Chord Tuning | Shirō Sagisu | 0:26 |
| 2 | Suite for Solo Cello no. 1 in G major, BWV 1007: 1. Prelude | Johann Sebastian Bach | 0:43 |
| 3 | Dvořák: Original Complete Version | Antonín Dvořák | 0:34 |
| 4 | Violin - Second Chord Tuning | Shirō Sagisu | 0:23 |
| 5 | Partita for Solo Violin no. 3 in E major, BWV 1006: 3. Gavotte en Rondeau | Johann Sebastian Bach | 0:23 |
| 6 | Viola - Third Chord Tuning | Shirō Sagisu | 1:10 |
| 7 | A Substitute for Kindness | Shirō Sagisu | 0:26 |
| 8 | Tears Towards Oneself | Shirō Sagisu | 2:07 |
| 9 | Tuning to Incompletion | Shirō Sagisu | 0:19 |
| 10 | Kanon D-dur (Quartet) | Johann Pachelbel | 5:00 |
| 11 | The Sorrow of Losing the Object of One's Dependence II | Shirō Sagisu | 1:35 |
| 12 | Reliance Upon a Falsehood | Shirō Sagisu | 1:48 |
| 13 | A Fragile Ego Boundary | Shirō Sagisu | 2:12 |
| 14 | Kanon D-dur (Strings Orchestra) | Johann Pachelbel | 5:12 |
| 15 | False Regeneration | Shirō Sagisu | 2:27 |
| 16 | Refrain of the Soul | Yōko Takahashi | 5:17 |
| 17 | Choir: Jesus Remains My Joy, Consolation and Savior of My Heart | Johann Sebastian Bach | 3:44 |
| 18 | Dies irae (Requiem) | Giuseppe Verdi | 3:43 |
| 1 | The Interference of Others | Shirō Sagisu | 2:21 |
| 2 | The End of Midsummer | Shirō Sagisu | 2:24 |
| 3 | Emergency Evacuation to Regression | Shirō Sagisu | 4:18 |
| 4 | False Regeneration | Shirō Sagisu | 2:30 |
| 5 | Vicarious Invasion | Shirō Sagisu | 3:30 |
| 6 | II Air (Orchestral Suite no. 3 in D major, BWV 1068) | Johann Sebastian Bach | 3:24 |
| 7 | Emptiness Flows | Shirō Sagisu | 6:17 |
| 8 | Thanatos -If I Can't Be Yours- | Loren & Mash | 4:53 |
| 9 | Escape to the Beginning | Shirō Sagisu | 5:00 |
| 10 | A Honeymoon with Anxiety | Shirō Sagisu | 1:40 |
| 11 | Come, Sweet Death (M-10 Director's Edit Version) | Arianne | 7:46 |
| 12 | Jesus, Joy of Man's Desiring (Herz und Mund und Tat und Leben BWV 147) | Johann Sebastian Bach | 4:50 |
| 13 | The Expansion of Blockades | Shirō Sagisu | 6:54 |
| 14 | A Gap in the Dream | Shirō Sagisu | 1:34 |
| 15 | M-9 ("The Expansion of Blockades" Original Version) | Shirō Sagisu | 6:52 |
| 16 | F02 (version 0706) | Shirō Sagisu | 0:31 |