| 1 | Prologue | Yasunori Mitsuda | 4:32 |
| 2 | Opening | Yasunori Mitsuda | 4:02 |
| 3 | Battle | Yasunori Mitsuda | 2:59 |
| 4 | 戦闘終了 | Yasunori Mitsuda | 0:42 |
| 5 | 起動試験 | Yasunori Mitsuda | 2:19 |
| 6 | 想いで | Yasunori Mitsuda | 3:14 |
| 7 | Gnosis | Yasunori Mitsuda | 4:22 |
| 8 | 覚醒 | Yasunori Mitsuda | 2:23 |
| 9 | シオンの危機 | Yasunori Mitsuda | 1:54 |
| 10 | 戦闘するKOS-MOS | Yasunori Mitsuda | 3:15 |
| 11 | 哀しみ | Yasunori Mitsuda | 3:43 |
| 12 | Life or Death | Yasunori Mitsuda | 3:15 |
| 13 | Game Over | Yasunori Mitsuda | 0:42 |
| 14 | Margulis | Yasunori Mitsuda | 4:24 |
| 15 | 追われる宇宙艇 | Yasunori Mitsuda | 3:33 |
| 16 | Relief | Yasunori Mitsuda | 2:43 |
| 17 | 日常 | Yasunori Mitsuda | 1:55 |
| 18 | U.M.N. MODE | Yasunori Mitsuda | 2:39 |
| 19 | Durandal | Yasunori Mitsuda | 2:32 |
| 20 | 敵艇内への侵攻 | Yasunori Mitsuda | 0:39 |
| 21 | U-TIC機関 | Yasunori Mitsuda | 2:45 |
| 22 | 心を閉ざした少女 | Yasunori Mitsuda | 2:13 |
| 23 | Kookai Foundation | Yasunori Mitsuda | 1:55 |
| 24 | Shion ~過去の記憶~ | Yasunori Mitsuda | 1:11 |
| 1 | Ormus | Yasunori Mitsuda | 2:27 |
| 2 | Nephilim | Yasunori Mitsuda | 2:31 |
| 3 | 温もり | Yasunori Mitsuda | 1:42 |
| 4 | 不安 | Yasunori Mitsuda | 4:08 |
| 5 | The Ressurection | Yasunori Mitsuda | 1:54 |
| 6 | 虚無の浜辺 | Yasunori Mitsuda | 2:28 |
| 7 | Green Sleeves | Yasunori Mitsuda | 2:25 |
| 8 | Zarathustra | Yasunori Mitsuda | 3:06 |
| 9 | KOS-MOS | Yasunori Mitsuda | 2:27 |
| 10 | Panic | Yasunori Mitsuda | 2:21 |
| 11 | Song of Nephilim | Yasunori Mitsuda | 1:04 |
| 12 | The Miracle | Yasunori Mitsuda | 1:52 |
| 13 | Inner Space | Yasunori Mitsuda | 1:47 |
| 14 | Albedo | Yasunori Mitsuda | 3:45 |
| 15 | Ω | Yasunori Mitsuda | 4:07 |
| 16 | Proto Merkabah | Yasunori Mitsuda | 5:25 |
| 17 | Last Battle | Yasunori Mitsuda | 5:05 |
| 18 | Pain | Joanne Hogg | 5:36 |
| 19 | Escape | Yasunori Mitsuda | 2:30 |
| 20 | Kokoro | Joanne Hogg | 5:35 |
| 21 | Shion ~想い~ | Yasunori Mitsuda | 1:19 |